Note: Dr. Muscarella is accepting new clients seeking guidance in infection prevention, hospital infections, instrument reprocessing, and other related topics.
February 21, 2022 (by: Lawrence F Muscarella, PhD) – An updated guideline published last year raises some questions about a common practice that endoscopy departments have been performing for years to prevent infections of potentially infectious microorganisms, particularly bacteria that can reside in water and grow rapidly on moist surfaces. Like three earlier versions of the guideline published in 2003, 2011 and 2017, this newly issued 2021 guideline provides updated guidance for the present-day reprocessing of flexible gastrointestinal endoscopes and accessories. For example, while reiterating several recommendations published in these three earlier versions, this 2021 guideline discusses some new and current topics including the use of single-use duodenoscopes and reprocessing GI endoscopes during the COVID-19 pandemic.
Studies dating back a few decades indicate that the addition of an alcohol flushing step prior to forced-air drying of the endoscope’s internal channel can more effectively prevent microbial contamination of the endoscope than forced air drying alone. — Lawrence F. Muscarella, Ph.D.Endoscope reprocessing is a multi-stepped process that centers around the cleaning and either high-level disinfection or sterilization of a flexible endoscope. This process removes and destroys microorganisms and viruses that contaminated the device during clinical use, rendering the endoscope “patient ready” and safe for reuse. The types of organisms that can contaminate a flexible endoscope during clinical use, and pose an infection risk, include carbapenem-resistant Enterobacteriaceae and other multidrug-resistant bacteria. Effective reprocessing also prevents environmental organisms from re-contaminating the device after disinfection or sterilization and prior to reuse.
To mitigate this potential infection risk, published guidelines recommend that, among other measures, the water used to rinse the endoscope’s surfaces terminally after chemical immersion be filtered (i.e., bacteria-free), and ideally sterile.
Thoroughly rinsing the endoscope terminally with water is necessary to remove residues of the chemicals used during reprocessing that can be potentially toxic to a patient’s tissues and mucosa.
Pseudomonas aeruginosa and other gram-negative bacteria are examples of the types of infectious organisms that can reside in tap water, re-contaminate the disinfected endoscope during water rinsing, and proliferate in a flexible endoscope’s wet internal channels. Like P. aeruginosa, nontuberculous mycobacteria such as Mycobacterium chelonae may also be found in tap water.
Other reprocessing steps include pre-cleaning the GI endoscope immediately after the endoscopic procedure to prevent bioburden from hardening and becoming too difficult to remove with a cleaning brush, and leak testing the endoscope before more thorough and complete reprocessing.
As manufacturer instructions advise and guidelines re-emphasize, failure to perform each endoscope reprocessing step properly can pose a significant risk of patient infection with associated morbidity and mortality. According to the federal Centers for Disease Control and Prevention (CDC), more healthcare–associated outbreaks have been linked to flexible endoscopes than to any other type of medical device.
This new “multisociety” guideline issued last year, like each of its three earlier versions released beginning in 2003, was endorsed by several collaborating organizations specializing in gastroenterology, infection prevention, surgery, and epidemiology.
Featuring several long and narrow internal channels, a GI endoscope is a type of flexible endoscope used to examine, diagnose and treat disorders of the upper and lower GI tracts.
Consulting Services, Expert Guidance and Case Reviews: LFM-Healthcare Solutions, LLC provides medical expertise for hospitals, manufacturers and the public, specializing in healthcare-associated infections linked to contaminated reusable medical equipment. Value oriented with years of experience.
Endoscope drying
In order to ensure that endoscopes are thoroughly dried, they must be flushed with 70% to 90% ethyl or isopropyl alcohol prior to being dried with pressurized, filtered air either by AER or manually. — Society of Gastroenterology Nurses and Associates (SGNA), 2018CDC further noted in that 2008 guideline, in the context of rinsing the endoscope with water after chemical immersion, that “no evidence of disease transmission has been found when a tap water rinse is followed by an alcohol rinse and forced-air drying.” Echoing similar advice, SGNA advised in its aforementioned 2018 guideline that: “In order to ensure that endoscopes are thoroughly dried, they must be flushed with 70% to 90% ethyl or isopropyl alcohol prior to being dried with pressurized, filtered air either by AER or manually.” SGNA clarified in that 2018 guideline that alcohol flushed through the endoscope “displaces water and evaporates more easily than water,” and that alcohol “mixes with the remaining water on the channel surfaces and encourages evaporation of the residual water as air flows through the channel.” As recently as last year, FDA advised that high-level disinfection (at least of bronchoscopes) should include, after the chemical immersion step, “rinsing with tap or utility water followed by alcohol flushing or with critical (filtered or sterile) water, and drying.”

This review identified studies reporting that 70% alcohol followed by forced air drying — in contrast to drying the endoscope using only forced air — can enhance drying and reduce the risk of the endoscope’s contamination and transmission of diseases. — Lawrence F. Muscarella, Ph.D.

Scientific Affairs, Expert Guidance and Case Reviews: LFM-Healthcare Solutions, LLC provides medical expertise for hospitals, manufacturers and the public, specializing in healthcare-associated infections linked to contaminated reusable medical equipment. Value oriented with years of experience.
Recommendations, Summary Studies dating back a few decades indicate that the addition of an alcohol flushing step prior to forced-air drying of the endoscope’s internal channel can more effectively prevent microbial contamination of the endoscope than forced air drying alone. A few of these studies reported that both the drying and biocidal properties of alcohol are likely responsible for these findings. This review acknowledges that not all guidelines agree and necessarily promote with similar emphasis this two-step practice. In fact, some reports caution that alcohol has “protein fixation properties that could lead to the retention of organisms within the endoscope” and potentially pose an increased infection risk.
Nevertheless, this review did not identify any data demonstrating that use of an alcohol rinse prior to forced-air drying provided no clinical benefit compared to forced air drying alone. Nor did this review identify any clinical data directly linking use of an alcohol rinse to an infection either through the fixation of proteins on the endoscope’s surface or otherwise.
Based primarily on this article’s review of the published data, the following recommendations are provided with a focus on increasing the safety of duodenoscopes and bronchoscopes:
- Meticulously clean and high-level disinfect, or sterilize, the flexible endoscope in accordance with manufacturer’s instructions and published guidelines.
- The periodic review of published endoscope reprocessing guidelines, including those published by SGNA and others discussed in this article, is encouraged to ensure proper training and staff competency.
- FDA guidance for the sterilization of semi-critical devices such as flexible endoscopes can be downloaded and read here.
- Rinse the flexible endoscope after chemical immersion using a validated process that uses copious amounts of bacteria-free, or ideally sterile, water consistent with manufacturer instructions.
- After water rinsing, this article recommends flushing the endoscope’s channels with medical-grade 70-90% ethyl or isopropyl alcohol followed by forced-air, consistent with the endoscope manufacturer’s instructions and published clinical studies, to facilitate drying and reduce the risk of contamination of the endoscope with waterborne bacteria. (It is acknowledged that not all guidelines agree with this recommendation.)
- These dying steps are recommended after each reprocessing cycle (especially before storage), whether using an AER or reprocessing the endoscope manually.
- Data suggest that newly designed AERs are considerably less susceptible to colonization with waterborne bacteria, compared to older recalled AER models implicated years ago (e.g., in the 1990s) during true- and pseudo-outbreak investigations. Use and servicing of the AER in accordance with its manufacturer’s instructions is necessary for effective endoscope reprocessing.
- A facility may consider conducting a risk assessment to help clarify the infection-prevention benefits of using an alcohol rinse to facilitate drying of the endoscope prior to forced air.
- Different types of flexible endoscopes may not all pose the same risk of infection.
-
Update (September 11, 2023): Consistent with this article’s findings and recommendation to flush the endoscope’s channels with 70% alcohol followed by forced air to facilitate drying and reduce the risk of infection, the World Gastroenterology Organization (WGO) published an updated endoscope disinfection guideline, in 2023, advising that: “Endoscopes should be dried after each procedure by purging the water from the channels with compressed air, then flushing the channels with alcohol, followed by forced air drying. Alcohol flush facilitates drying and is a useful adjunct to disinfection because of its bactericidal effects.” -
No matter the potential clinical benefits, however, using alcohol to facilitate drying of the endoscope, either in an endoscopy or operating room setting, should not be performed if contraindicated by the flexible endoscope’s manufacturer.- One duodenoscope manufacturer’s recommendation to use alcohol to facilitate drying can be downloaded and read here.
- When using alcohol, store the medical-grade product in an airtight container to prevent both evaporation and a fire hazard that could be associated with alcohol stored in an open container. Refer to the endoscope manufacturer’s reprocessing instructions for more information.
- These dying steps are recommended after each reprocessing cycle (especially before storage), whether using an AER or reprocessing the endoscope manually.
- Routine microbiologic sampling of the rinse water used during endoscope reprocessing has been recommended (and may be considered per the findings of a risk assessment). Microbiologically testing the reprocessed endoscope to confirm the absence of organisms prior to use has also been recommended in certain circumstances.
- FDA in 2015 began recommending facilities consider microbiological culturing of duodenoscopes as a “supplemental measure” to enhance reprocessing effectiveness.
- Nevertheless, the newly issued 2021 multisociety guideline states that the “use of routine environmental microbiologic testing of endoscopes for quality assurance has not been established but is currently the most recognized technique to detect bacterial contamination of reprocessed endoscopes. If microbiologic testing of fully reprocessed and dried endoscopes is considered and performed, then standard microbiologic techniques per FDA and CDC guidance should be used.”
- One recent study found that different sampling methods applied to reprocessed GI endoscopes can result in different microbiological culture data and conclusions, underscoring the importance of proper training and technique.
- Most European guidelines recommend routine microbiological surveillance of flexible endoscopes to mitigate the infection risk.
- Other preventative practices, such as ensuring proper maintenance, routine inspection and periodic servicing of the endoscope per manufacturer recommendations are important to safety and avoiding use of a damaged endoscope, which can pose an infection risk.
- This list of recommendations is incomplete. Please review the manufacturer’s device labeling and instructions, as well as current FDA and CDC guidelines, for additional guidance.
Note: “Linking” or ”associating“ a flexible endoscope or other type of reusable device with an infection or an outbreak does not confirm the device transmitted or otherwise caused the infection as one or more other factors could be, in part or solely, responsible. More data would be required to conclude more definitively that a specific device caused an infection.
Article by: Lawrence F Muscarella, PhD. Copyright (2022). LFM Healthcare Solutions, LLC. All rights reserved. Dr. Muscarella is the president of LFM Healthcare Solutions, LLC, an independent quality improvement company. Click here for a discussion of his quality improvement healthcare services. E: Larry@LFM-HCS.com. LFM-v-1.2
